Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR94881.1Ferredoxin. (299 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 0.997
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 0.997
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 0.990
korB
2-oxoglutarate oxidoreductase subunit KorB.
  
 0.904
adhE_3
Aldehyde-alcohol dehydrogenase.
  
 0.778
adhE_5
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.778
pyk_1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.772
pyk_2
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.772
hndC_1
NADP-reducing hydrogenase subunit HndC.
  
  
 0.648
hndC_3
NADP-reducing hydrogenase subunit HndC.
  
  
 0.640
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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