Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR94889.1Hypothetical protein. (341 aa)    
Predicted Functional Partners:
sigM
RNA polymerase sigma factor SigM.
 
     0.834
AQR93772.1
Hypothetical protein.
  
     0.762
AQR93797.1
Hypothetical protein.
  
     0.754
AQR93239.1
Hypothetical protein.
  
     0.747
AQR94225.1
Hypothetical protein.
  
     0.746
AQR92871.1
Hypothetical protein.
  
     0.745
AQR92810.1
Hypothetical protein.
  
     0.738
AQR93057.1
Putative RNA polymerase sigma factor SigI.
  
     0.738
toxA_6
Toxin A.
  
     0.722
lytA_10
Autolysin.
  
     0.718
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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