STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treR_1Trehalose operon transcriptional repressor. (239 aa)    
Predicted Functional Partners:
sacX_2
Negative regulator of SacY activity.
 
  
 0.756
treB
PTS system trehalose-specific EIIBC component.
 
  
 0.738
sacX_1
Negative regulator of SacY activity.
 
  
 0.696
lutR_3
HTH-type transcriptional regulator LutR.
  
  
 0.605
bglF_7
PTS system beta-glucoside-specific EIIBCA component.
 
  
 0.587
lutR_1
HTH-type transcriptional regulator LutR.
  
  
 0.584
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
  
  
 0.572
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.563
bglF_8
PTS system beta-glucoside-specific EIIBCA component.
 
  
 0.540
bglF_6
PTS system beta-glucoside-specific EIIBCA component.
 
  
 0.524
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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