STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI14-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (278 aa)    
Predicted Functional Partners:
kduD_1
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
 
 
 0.995
kduD_2
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
 
 
 0.964
gno
Gluconate 5-dehydrogenase.
 
 
 0.944
yteR
Unsaturated rhamnogalacturonyl hydrolase YteR.
 
   
 0.808
yesR
Unsaturated rhamnogalacturonyl hydrolase YesR.
 
   
 0.749
pgl_2
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.738
minE
Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.691
uxaA
Altronate dehydratase.
 
  
 0.666
AQR93581.1
Xylose isomerase-like TIM barrel.
 
     0.664
AQR94395.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.613
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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