Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yocH_2Cell wall-binding protein YocH precursor. (137 aa)    
Predicted Functional Partners:
AQR93500.1
Hypothetical protein.
  
  
 0.686
AQR93516.1
LysM domain/BON superfamily protein.
  
  
 0.686
AQR95571.1
Bacterial SH3 domain protein.
  
  
 0.686
mepH_1
Murein DD-endopeptidase MepH precursor.
 
 
 0.648
iap_1
Putative endopeptidase p60 precursor.
 
 
 0.646
mepH_3
Murein DD-endopeptidase MepH precursor.
 
 
 0.623
toxB_1
Toxin B.
   
  
 0.619
AQR96483.1
Hypothetical protein.
   
  
 0.619
ykuD
Putative L,D-transpeptidase YkuD.
    
 0.614
iap_2
Putative endopeptidase p60 precursor.
  
 
 0.600
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.