hupR1_2 protein (Clostridium saccharoperbutylacetonicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hupR1_2

Hydrogenase transcriptional regulatory protein hupR1. (396 aa)

Predicted Functional Partners:

zraS_1

0.950

zraS_2

0.947

flhB_1

0.903

tmoS_3

0.901

fliN

0.887

zraS_4

0.880

barA_2

0.843

zraS_3

0.841

rpfC_2

0.828

rpfC_1

0.823

Your Current Organism:

Clostridium saccharoperbutylacetonicum

NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
barA_2	flhB_1	CLSAP_36490	CLSAP_42700	Signal transduction histidine-protein kinase BarA.	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	0.691
barA_2	fliN	CLSAP_36490	CLSAP_43540	Signal transduction histidine-protein kinase BarA.	Flagellar motor switch protein FliN.	0.853
barA_2	hupR1_2	CLSAP_36490	CLSAP_22570	Signal transduction histidine-protein kinase BarA.	Hydrogenase transcriptional regulatory protein hupR1.	0.843
barA_2	rpfC_1	CLSAP_36490	CLSAP_33870	Signal transduction histidine-protein kinase BarA.	Sensory/regulatory protein RpfC.	0.975
barA_2	rpfC_2	CLSAP_36490	CLSAP_46940	Signal transduction histidine-protein kinase BarA.	Sensory/regulatory protein RpfC.	0.976
barA_2	tmoS_3	CLSAP_36490	CLSAP_37090	Signal transduction histidine-protein kinase BarA.	Sensor histidine kinase TmoS.	0.808
barA_2	zraS_1	CLSAP_36490	CLSAP_22590	Signal transduction histidine-protein kinase BarA.	Sensor protein ZraS.	0.834
barA_2	zraS_2	CLSAP_36490	CLSAP_22600	Signal transduction histidine-protein kinase BarA.	Sensor protein ZraS.	0.954
barA_2	zraS_3	CLSAP_36490	CLSAP_26100	Signal transduction histidine-protein kinase BarA.	Sensor protein ZraS.	0.705
barA_2	zraS_4	CLSAP_36490	CLSAP_26110	Signal transduction histidine-protein kinase BarA.	Sensor protein ZraS.	0.954
flhB_1	barA_2	CLSAP_42700	CLSAP_36490	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Signal transduction histidine-protein kinase BarA.	0.691
flhB_1	fliN	CLSAP_42700	CLSAP_43540	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Flagellar motor switch protein FliN.	0.999
flhB_1	hupR1_2	CLSAP_42700	CLSAP_22570	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Hydrogenase transcriptional regulatory protein hupR1.	0.903
flhB_1	rpfC_1	CLSAP_42700	CLSAP_33870	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Sensory/regulatory protein RpfC.	0.864
flhB_1	rpfC_2	CLSAP_42700	CLSAP_46940	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Sensory/regulatory protein RpfC.	0.864
flhB_1	tmoS_3	CLSAP_42700	CLSAP_37090	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Sensor histidine kinase TmoS.	0.563
flhB_1	zraS_1	CLSAP_42700	CLSAP_22590	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Sensor protein ZraS.	0.495
flhB_1	zraS_2	CLSAP_42700	CLSAP_22600	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Sensor protein ZraS.	0.585
flhB_1	zraS_3	CLSAP_42700	CLSAP_26100	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Sensor protein ZraS.	0.495
flhB_1	zraS_4	CLSAP_42700	CLSAP_26110	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	Sensor protein ZraS.	0.585

page 1 of 5

Server load: medium (50%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About