STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_2Tyrosine recombinase XerD. (363 aa)    
Predicted Functional Partners:
xerC_2
Tyrosine recombinase XerC.
 
     0.919
AQR94962.1
Phage integrase family protein.
 
     0.916
AQR94963.1
Hypothetical protein.
 
     0.907
xerD_1
Tyrosine recombinase XerD.
  
     0.768
xerC_1
Tyrosine recombinase XerC.
  
     0.735
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
      
 0.644
AQR94675.1
Hypothetical protein.
      
 0.644
tmoS_1
Sensor histidine kinase TmoS.
      
 0.639
lgrE_3
Linear gramicidin dehydrogenase LgrE.
      
 0.636
sfp_3
4'-phosphopantetheinyl transferase sfp; Belongs to the P-Pant transferase superfamily.
      
 0.636
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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