STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94965.1Hypothetical protein. (203 aa)    
Predicted Functional Partners:
ecfT_1
Energy-coupling factor transporter transmembrane protein EcfT; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 0.646
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
  
 0.646
nikQ
Nickel transport protein NikQ.
  
 0.646
cbiQ
Cobalt transport protein CbiQ.
  
 0.646
AQR95592.1
Putative cell wall binding repeat protein.
  
    0.612
bioY2
Biotin transporter BioY2.
     
 0.544
AQR95324.1
Hypothetical protein.
 
     0.531
AQR94922.1
Putative GTP-binding protein YjiA.
  
    0.490
oppF_1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
 
 0.478
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
  
 
 0.478
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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