Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
aguA_1Agmatine deiminase. (367 aa)    
Predicted Functional Partners:
AQR94968.1
N-carbamoyl-D-amino acid hydrolase.
 
 0.999
speA_2
Arginine decarboxylase.
    
 0.968
AQR97090.1
Carboxynorspermidine synthase.
    
  0.914
speD
S-adenosylmethionine decarboxylase proenzyme precursor; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily.
 
  
 0.724
nadE_1
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.713
speA_1
Arginine decarboxylase.
    
 0.699
AQR97888.1
2-oxoglutaramate amidase.
 
 
 0.655
adhE_3
Aldehyde-alcohol dehydrogenase.
  
  
 0.545
AQR94970.1
Hypothetical protein.
       0.536
nadC
Putative nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
   
    0.527
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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