STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yghBInner membrane protein YghB. (200 aa)    
Predicted Functional Partners:
hndC_1
NADP-reducing hydrogenase subunit HndC.
    
 0.827
urdA
Urocanate reductase precursor.
    
 0.673
hndC_2
NADP-reducing hydrogenase subunit HndC.
    
 0.670
AQR95667.1
Isochorismatase family protein.
    
 0.668
rppH
RNA pyrophosphohydrolase.
     
 0.664
hndC_3
NADP-reducing hydrogenase subunit HndC.
    
 0.639
nadK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
    
  0.611
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.583
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.583
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.545
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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