Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95038.1Hypothetical protein. (165 aa)    
Predicted Functional Partners:
toxA_6
Toxin A.
 
  
 0.757
AQR93772.1
Hypothetical protein.
 
     0.747
AQR95991.1
Hypothetical protein.
  
     0.738
AQR92871.1
Hypothetical protein.
  
   
 0.734
AQR95973.1
HIRAN domain protein.
  
     0.720
AQR94172.1
Hypothetical protein.
  
     0.719
rsmA_1
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.718
AQR97227.1
Cadherin-like beta sandwich domain protein.
  
  
 0.718
era_2
GTPase Era.
  
     0.709
AQR96826.1
Bacterial dynamin-like protein.
  
     0.705
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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