STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95040.1Dihydropteridine reductase. (191 aa)    
Predicted Functional Partners:
ywaC_2
GTP pyrophosphokinase YwaC.
       0.754
AQR93229.1
ABC-2 family transporter protein.
  
  
 0.607
AQR95041.1
Hypothetical protein.
       0.605
AQR94571.1
Ferredoxin.
  
   
 0.598
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.588
AQR97398.1
Ferredoxin-2.
  
   
 0.576
flr_2
Flavoredoxin.
 
 
 0.565
rsxB_4
Electron transport complex subunit RsxB.
  
   
 0.556
urdA
Urocanate reductase precursor.
    
 0.547
AQR93228.1
ABC-2 family transporter protein.
 
  
 0.537
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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