Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cqsS_2CAI-1 autoinducer sensor kinase/phosphatase CqsS. (126 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
 
 0.870
rpfC_2
Sensory/regulatory protein RpfC.
 
 0.795
rpfC_1
Sensory/regulatory protein RpfC.
 
 0.789
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 0.774
barA_1
Signal transduction histidine-protein kinase BarA.
 
 0.693
todS_3
Sensor histidine kinase TodS.
 
 0.688
todS_2
Sensor histidine kinase TodS.
 
 0.686
todS_1
Sensor histidine kinase TodS.
 
 0.678
phoR_9
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.621
glnK
Sensor histidine kinase GlnK.
  
 0.609
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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