STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
moaA_4Cyclic pyranopterin monophosphate synthase. (217 aa)    
Predicted Functional Partners:
ycfH
Putative deoxyribonuclease YcfH.
      0.903
adhE_3
Aldehyde-alcohol dehydrogenase.
  
 
 0.774
adhE_5
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.774
pdxK
Pyridoxine kinase; Belongs to the pyridoxine kinase family.
 
     0.757
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.734
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.734
csdB
4-hydroxyphenylacetate decarboxylase large subunit.
 
 
 0.628
adhE_1
Aldehyde-alcohol dehydrogenase.
  
 
 0.594
adhE_4
Aldehyde-alcohol dehydrogenase.
  
 
 0.594
mdh_1
NAD-dependent methanol dehydrogenase.
  
 
 0.594
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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