Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95085.1Hypothetical protein. (444 aa)    
Predicted Functional Partners:
epsE_2
Putative glycosyltransferase EpsE.
     
 0.660
kanF
2-deoxystreptamine glucosyltransferase.
       0.577
AQR95088.1
Polysaccharide biosynthesis protein.
 
   
 0.544
cap8A_2
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
   
 0.474
AQR95081.1
Polysaccharide pyruvyl transferase.
       0.456
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
   
 0.454
AQR95082.1
F420H2 dehydrogenase subunit F.
       0.443
ywqE
Tyrosine-protein phosphatase YwqE.
 
   
 0.442
vatD
Streptogramin A acetyltransferase.
       0.402
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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