STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95087.1Capsular polysaccharide synthesis protein. (335 aa)    
Predicted Functional Partners:
AQR95088.1
Polysaccharide biosynthesis protein.
  
  
 0.774
rmlA_1
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
    0.765
vatD
Streptogramin A acetyltransferase.
       0.614
rfbD
UDP-galactopyranose mutase precursor.
 
  
 0.602
rmlD_2
dTDP-4-dehydrorhamnose reductase.
  
    0.500
tuaA_2
Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase.
 
  
 0.466
AQR96975.1
Hypothetical protein.
  
    0.459
kanF
2-deoxystreptamine glucosyltransferase.
  
  
 0.450
epsE_2
Putative glycosyltransferase EpsE.
  
  
 0.444
rfbX
Putative O-antigen transporter.
 
  
 0.440
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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