STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ywqD_2Tyrosine-protein kinase YwqD. (232 aa)    
Predicted Functional Partners:
cap8A_2
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
 0.994
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
 0.935
ywqE
Tyrosine-protein phosphatase YwqE.
  
 0.925
tuaA_2
Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase.
 
  
 0.885
tuaA_1
Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase.
 
  
 0.824
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.815
hndC_1
NADP-reducing hydrogenase subunit HndC.
  
 
 0.796
wcaJ_1
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.784
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
 
  
 0.660
AQR93884.1
Hypothetical protein.
  
 
 0.604
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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