Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95114.1Hypothetical protein. (140 aa)    
Predicted Functional Partners:
AQR94428.1
Transcriptional regulator PadR-like family protein.
 
   
 0.731
AQR94868.1
Glyoxalase-like domain protein.
 
     0.676
AQR95906.1
Hypothetical protein.
  
     0.631
bmrR_1
Multidrug-efflux transporter 1 regulator.
 
     0.604
AQR96555.1
Hypothetical protein.
  
     0.558
rho
Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
    0.551
bmrR_4
Multidrug-efflux transporter 1 regulator.
 
     0.507
AQR96556.1
Hypothetical protein.
  
     0.502
AQR97170.1
Hypothetical protein.
  
     0.476
AQR96590.1
Hypothetical protein.
  
     0.470
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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