Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95119.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
hemN_3
Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR.
 
     0.744
ytxC
YtxC-like family protein.
 
     0.699
alkA
DNA-3-methyladenine glycosylase.
  
     0.689
AQR95970.1
Hypothetical protein.
  
     0.665
AQR96839.1
Hypothetical protein.
  
     0.651
AQR98243.1
MazG-like family protein.
  
     0.622
AQR92810.1
Hypothetical protein.
  
     0.606
AQR95687.1
Putative amidase domain protein.
  
     0.602
AQR93304.1
LysM domain protein.
  
     0.586
dnaC_1
DNA replication protein DnaC.
  
     0.577
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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