Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
spoVD_2Stage V sporulation protein D. (755 aa)    
Predicted Functional Partners:
dacF_2
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
 
 
 0.992
rodA
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 0.982
ponA
Penicillin-binding protein 1A/1B.
 
 
 0.981
dacB_1
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
 
 
 0.980
dacB_2
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
 
 
 0.978
ftsW_1
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.971
spoVD_3
Stage V sporulation protein D.
 
  
0.969
vanYB
D-alanyl-D-alanine carboxypeptidase.
     
 0.961
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 0.950
ftsW_2
Lipid II flippase FtsW; Belongs to the SEDS family.
 
 0.941
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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