STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspEPutative type II secretion system protein E. (349 aa)    
Predicted Functional Partners:
epsF_2
Type II secretion system protein F.
 
 
 0.993
epsF_3
Type II secretion system protein F.
 
 
 0.973
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
 
 0.917
pilM
Competence protein A.
 
 
 0.884
fimA
Fimbrial protein precursor.
 
 
 0.882
AQR95159.1
Hypothetical protein.
       0.812
AQR95160.1
Hypothetical protein.
       0.812
xcpT
Type II secretion system protein G precursor.
 
 
 0.807
AQR95161.1
Hypothetical protein.
       0.792
AQR95162.1
Hypothetical protein.
       0.792
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.