STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsF_2Type II secretion system protein F. (342 aa)    
Predicted Functional Partners:
gspE
Putative type II secretion system protein E.
 
 
 0.993
xpsE
Type II secretion system protein E.
 
 
 0.973
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
  
 0.909
pilM
Competence protein A.
 
 
 
 0.901
fimA
Fimbrial protein precursor.
 
  
 0.891
pilT
Twitching mobility protein.
 
  
 0.876
AQR95159.1
Hypothetical protein.
       0.844
AQR95160.1
Hypothetical protein.
       0.844
AQR95161.1
Hypothetical protein.
       0.844
AQR95162.1
Hypothetical protein.
       0.844
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.