STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95167.1Hypothetical protein. (122 aa)    
Predicted Functional Partners:
spoIIIAA
Hypothetical protein.
       0.643
spoIIIAB
Stage III sporulation protein SpoAB.
       0.643
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.638
spoIIIAC
Stage III sporulation protein AC/AD protein family protein.
       0.629
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
       0.622
spoIIIAE
Stage III sporulation protein AE precursor.
       0.618
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
       0.618
spoIIIAF
Hypothetical protein.
       0.611
spoIIIAG
SpoIIIAH-like protein.
       0.573
AQR95176.1
Alkaline shock protein 23.
       0.477
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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