Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIACStage III sporulation protein AC/AD protein family protein. (65 aa)    
Predicted Functional Partners:
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.988
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.987
spoIIIAA
Hypothetical protein.
 
  
 0.984
spoIIIAB
Stage III sporulation protein SpoAB.
  
  
 0.979
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
 
  
 0.969
spoIIIAF
Hypothetical protein.
 
  
 0.956
spoIIIAG
SpoIIIAH-like protein.
 
  
 0.906
spoIIID
Stage III sporulation protein D.
  
  
 0.799
spoIIP
Stage II sporulation protein SpoIIP.
  
  
 0.795
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.765
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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