STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIAE2Stage III sporulation protein SpoIIIAF. (199 aa)    
Predicted Functional Partners:
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.995
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.991
spoIIIAF
Hypothetical protein.
 
  
 0.983
spoIIIAC
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.973
spoIIIAG
SpoIIIAH-like protein.
 
  
 0.970
spoIIIAB
Stage III sporulation protein SpoAB.
 
  
 0.956
spoIIIAA
Hypothetical protein.
 
  
 0.909
AQR93304.1
LysM domain protein.
  
    0.774
AQR92810.1
Hypothetical protein.
  
     0.764
AQR97678.1
37-kD nucleoid-associated bacterial protein.
  
     0.753
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.