STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIAGSpoIIIAH-like protein. (171 aa)    
Predicted Functional Partners:
spoIIIAF
Hypothetical protein.
 
  
 0.990
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
 
  
 0.971
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.944
spoIIIAB
Stage III sporulation protein SpoAB.
 
  
 0.924
spoIIIAA
Hypothetical protein.
  
  
 0.915
spoIIIAC
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.906
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.881
AQR93304.1
LysM domain protein.
  
  
 0.808
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.799
spoIIP
Stage II sporulation protein SpoIIP.
  
   
 0.793
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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