STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95176.1Alkaline shock protein 23. (126 aa)    
Predicted Functional Partners:
impDH
Inosine-5'-monophosphate dehydrogenase.
   
    0.844
nusB
Hypothetical protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.722
spoIIIAG
SpoIIIAH-like protein.
  
    0.701
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
 
    0.687
spoIIIAE
Stage III sporulation protein AE precursor.
  
    0.644
spoIIIAE2
Stage III sporulation protein SpoIIIAF.
  
    0.643
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
 
    0.634
spoIIIAF
Hypothetical protein.
       0.630
folD
Bifunctional protein FolD protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.612
spoIIIAC
Stage III sporulation protein AC/AD protein family protein.
       0.611
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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