STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltD_1Glutamate synthase [NADPH] small chain. (462 aa)    
Predicted Functional Partners:
gltB_2
Ferredoxin-dependent glutamate synthase 1.
 0.999
pyrK_2
Dihydroorotate dehydrogenase B, electron transfer subunit.
 0.997
pyrK_4
Dihydroorotate dehydrogenase B, electron transfer subunit.
 0.990
glnA_2
Glutamine synthetase.
  
 
 0.974
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
    
 0.968
carB_1
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
  
 
 0.967
gltB_1
Glutamate synthase [NADPH] small chain.
  
  
 
0.967
glnA_1
Glutamine synthetase.
    
 0.964
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
 0.955
gltD_2
Glutamate synthase [NADPH] small chain.
  
  
 
0.944
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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