Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95224.1CAAX amino terminal protease self- immunity. (323 aa)    
Predicted Functional Partners:
lyc_2
Autolytic lysozyme.
  
     0.542
AQR96483.1
Hypothetical protein.
  
 
 
 0.530
toxB_1
Toxin B.
  
 
 
 0.528
lyc_5
Autolytic lysozyme.
  
     0.508
rsxB_4
Electron transport complex subunit RsxB.
  
  
 0.466
AQR94571.1
Ferredoxin.
  
  
 0.466
AQR96254.1
Ferredoxin-3.
  
  
 0.466
AQR97398.1
Ferredoxin-2.
  
  
 0.466
AQR97488.1
Ferredoxin-2.
  
  
 0.460
AQR98004.1
Ferredoxin.
  
  
 0.460
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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