STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tldD_2Metalloprotease TldD. (471 aa)    
Predicted Functional Partners:
pmbA_2
Metalloprotease PmbA.
 
     0.950
AQR95233.1
Hypothetical protein.
       0.773
srrA_4
Transcriptional regulatory protein SrrA.
     
 0.452
pmbA_1
Metalloprotease PmbA.
 
    
0.443
AQR97526.1
RNase H.
  
   
 0.440
baeS_4
Signal transduction histidine-protein kinase BaeS.
       0.436
AQR95230.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.435
AQR95151.1
Fibronectin-binding protein A N-terminus (FbpA).
   
    0.424
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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