Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
emrK_4Putative multidrug resistance protein EmrK. (349 aa)    
Predicted Functional Partners:
ybhS
Inner membrane transport permease YbhS.
 
  
 0.958
AQR95255.1
ABC-2 family transporter protein.
 
    0.958
macB_3
Macrolide export ATP-binding/permease protein MacB.
  
 
 0.821
AQR95256.1
Outer membrane efflux protein.
  
 0.810
lagD
lactococcin-G-processing and transport ATP-binding protein LagD.
  
 0.742
macB_4
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.718
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.710
emrA_2
Multidrug export protein EmrA.
  
     0.700
AQR95829.1
Hypothetical protein.
  
 0.674
AQR94723.1
Hypothetical protein.
  
 0.655
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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