STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhSInner membrane transport permease YbhS. (407 aa)    
Predicted Functional Partners:
emrK_4
Putative multidrug resistance protein EmrK.
 
  
 0.963
AQR95255.1
ABC-2 family transporter protein.
 
   
0.895
AQR97520.1
Putative efflux pump membrane fusion protein.
 
  
 0.794
emrK_5
Putative multidrug resistance protein EmrK.
 
  
 0.755
emrK_1
Putative multidrug resistance protein EmrK.
 
  
 0.753
mdtA_2
Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.692
emrA_1
Multidrug export protein EmrA.
 
  
 0.667
ybhF_3
Putative ABC transporter ATP-binding protein YbhF.
 
 0.641
mdtN_4
Multidrug resistance protein MdtN; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.626
emrK_3
Putative multidrug resistance protein EmrK.
 
  
 0.619
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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