STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95261.1Hypothetical protein. (268 aa)    
Predicted Functional Partners:
garA
Glycogen accumulation regulator GarA.
 
   
 0.776
htrA_2
Putative serine protease HtrA.
       0.724
moeZ
Putative adenylyltransferase/sulfurtransferase MoeZ.
 
     0.718
AQR95262.1
Hypothetical protein.
 
    
0.698
AQR95263.1
Mov34/MPN/PAD-1 family protein.
       0.685
AQR95257.1
Hypothetical protein.
       0.684
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.555
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.543
opuCC
Carnitine transport binding protein OpuCC precursor.
  
  
 0.497
rplQ
50S ribosomal protein L17.
  
    0.493
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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