STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacF_2D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family. (396 aa)    
Predicted Functional Partners:
spoVD_2
Stage V sporulation protein D.
 
 
 0.992
penA
Penicillin-binding protein 2B.
 
 
 0.988
spoVD_3
Stage V sporulation protein D.
 
 
 0.979
pbpA
Penicillin-binding protein A.
  
 
 0.970
ponA
Penicillin-binding protein 1A/1B.
     
 0.969
dacB_2
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
 
  
0.932
dacB_1
D-alanyl-D-alanine carboxypeptidase DacB precursor; Belongs to the peptidase S11 family.
 
  
0.928
vanYB
D-alanyl-D-alanine carboxypeptidase.
    
 0.918
spoIIP
Stage II sporulation protein SpoIIP.
  
  
 0.860
rodA
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 
 0.837
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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