STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmpDBicarbonate transport ATP-binding protein CmpD. (250 aa)    
Predicted Functional Partners:
ssuC_4
Putative aliphatic sulfonates transport permease protein SsuC.
 
 0.998
AQR95284.1
Putative thiamine biosynthesis protein.
 
 
 0.997
ssuC_6
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.888
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.859
ssuC_5
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.859
ssuC_3
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.855
AQR96563.1
Putative thiamine biosynthesis protein.
 
 
 0.849
AQR93821.1
ABC transporter, phosphonate, periplasmic substrate-binding protein.
  
 
 0.794
tauA
Taurine-binding periplasmic protein precursor.
 
 
 0.753
AQR93724.1
NMT1/THI5 like protein.
  
 
 0.747
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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