Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
adaA_1Bifunctional transcriptional activator/DNA repair enzyme AdaA. (297 aa)    
Predicted Functional Partners:
melR_1
Melibiose operon regulatory protein.
 
 
 0.827
tetD_3
Transposon Tn10 TetD protein.
 
 
 0.818
marA
Multiple antibiotic resistance protein MarA.
 
 
 0.762
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.761
rhaS_6
HTH-type transcriptional activator RhaS.
 
 
 0.735
tetD_2
Transposon Tn10 TetD protein.
 
 
 0.695
rhaS_3
HTH-type transcriptional activator RhaS.
 
 
 0.679
melR_3
Melibiose operon regulatory protein.
 
 
0.673
cdhR
HTH-type transcriptional regulator CdhR.
 
 
0.660
pchR
Regulatory protein PchR.
 
 
 0.656
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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