Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cadCHypothetical protein; Transcriptional repressor SmtB homolog. (121 aa)    
Predicted Functional Partners:
cadA
Cadmium, zinc and cobalt-transporting ATPase.
 
  
 0.968
copA_1
Copper-exporting P-type ATPase A.
 
  
 0.735
sdpR
Transcriptional repressor SdpR.
 
  
 0.701
AQR96098.1
Hypothetical protein.
  
  
 0.616
copA_3
Copper-exporting P-type ATPase A.
 
  
 0.575
cdr_2
Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.499
sigV_3
RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.443
AQR95305.1
Hypothetical protein.
       0.428
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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