STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csgDCsgBAC operon transcriptional regulatory protein. (253 aa)    
Predicted Functional Partners:
patA_3
Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.585
patB
Cystathionine beta-lyase PatB.
    
   0.564
tpa
Taurine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.564
pucR_3
Purine catabolism regulatory protein.
  
     0.535
glnB_1
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
    0.513
AQR93271.1
Hypothetical protein.
  
     0.493
AQR96313.1
Acetyltransferase (GNAT) family protein.
  
     0.487
potD
Spermidine/putrescine-binding periplasmic protein precursor.
 
     0.466
AQR95330.1
Hypothetical protein.
       0.452
ssuC_5
Putative aliphatic sulfonates transport permease protein SsuC.
  
     0.450
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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