STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95344.1Helix-turn-helix domain protein. (433 aa)    
Predicted Functional Partners:
AQR96023.1
Tetratricopeptide repeat protein.
  
  
  0.918
AQR95595.1
Tetratricopeptide repeat protein.
  
   
 0.863
AQR95343.1
Hypothetical protein.
     
 0.814
sfp_3
4'-phosphopantetheinyl transferase sfp; Belongs to the P-Pant transferase superfamily.
     
 0.748
lgrE_3
Linear gramicidin dehydrogenase LgrE.
     
 0.724
AQR94680.1
Hypothetical protein.
      
 0.630
AQR94681.1
Hypothetical protein.
      
 0.630
AQR95596.1
Hypothetical protein.
      
 0.630
pyrK_3
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
     0.584
AQR96470.1
Hypothetical protein.
 
     0.569
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.