STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mntP_2Manganese efflux pump MntP. (204 aa)    
Predicted Functional Partners:
spoIIM
Stage II sporulation protein M.
  
     0.558
spoIIE
Stage II sporulation protein E.
  
     0.550
malT_2
HTH-type transcriptional regulator MalT.
 
     0.527
gerBA
Spore germination protein B1.
  
     0.487
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.473
yabP
Spore protein YabP.
  
   
 0.443
AQR93922.1
PRC-barrel domain protein.
  
  
 0.443
yyaC
Hypothetical protein.
  
   
 0.442
spoIIR
Stage II sporulation protein SpoIIR.
 
     0.441
spoVAD_2
Stage V sporulation protein AD.
  
    0.438
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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