STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
malT_2HTH-type transcriptional regulator MalT. (252 aa)    
Predicted Functional Partners:
patA_3
Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.620
AQR92871.1
Hypothetical protein.
 
     0.550
AQR95559.1
Hypothetical protein.
  
     0.529
mntP_2
Manganese efflux pump MntP.
 
     0.527
AQR94172.1
Hypothetical protein.
  
     0.516
AQR93797.1
Hypothetical protein.
  
     0.511
AQR94429.1
Hypothetical protein; Glycosyltransferase family 28 C-terminal domain.
  
     0.509
AQR93239.1
Hypothetical protein.
  
     0.497
AQR93217.1
Glutathionylspermidine synthase.
  
     0.485
hsp
18 kDa heat shock protein; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.484
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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