STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR95368.1Bacteriohemerythrin. (133 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.859
AQR97086.1
Bacteriohemerythrin.
 
     0.778
AQR93459.1
Bacteriohemerythrin.
 
     0.749
fliN
Flagellar motor switch protein FliN.
  
   0.719
rsbP
Phosphoserine phosphatase RsbP.
  
 
 0.709
senX3
Signal-transduction histidine kinase senX3.
  
  
 0.698
cph2_2
Phytochrome-like protein cph2.
  
 
 0.664
fliF
Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
    0.639
rpfG_12
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
  
 0.635
gmr_4
Cyclic di-GMP phosphodiesterase Gmr.
  
 
 0.625
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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