STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cph2_1Phytochrome-like protein cph2. (595 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.970
gmr_4
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.928
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 
0.918
rpfG_17
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.914
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
  
 0.911
rpfG_12
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.897
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.897
ycdT_1
Putative diguanylate cyclase YcdT.
 
  
 0.890
rsbP
Phosphoserine phosphatase RsbP.
  
 
 0.880
rpfC_1
Sensory/regulatory protein RpfC.
 
 
 0.862
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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