STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccSInner membrane protein YccS. (628 aa)    
Predicted Functional Partners:
slyA_7
Transcriptional regulator SlyA.
     
 0.805
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
   
    0.658
AQR94675.1
Hypothetical protein.
   
    0.658
sufU
Zinc-dependent sulfurtransferase SufU.
   
    0.658
emrA_2
Multidrug export protein EmrA.
 
 
 0.576
emrK_2
Putative multidrug resistance protein EmrK.
 
 
 0.552
pheT
phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.532
emrA_1
Multidrug export protein EmrA.
 
 
 0.528
flgG_1
Flagellar basal-body rod protein FlgG.
    
   0.483
flgG_2
Flagellar basal-body rod protein FlgG.
    
   0.483
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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