STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narTPutative nitrate transporter NarT. (433 aa)    
Predicted Functional Partners:
narB
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.962
cysI
Sulfite reductase [NADPH] hemoprotein beta-component; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
    
 0.915
fni
Isopentenyl-diphosphate delta-isomerase.
  
 
 0.914
ntcA
Global nitrogen regulator.
 
  
 0.684
dmsB_2
Anaerobic dimethyl sulfoxide reductase chain B.
 
  
 0.637
dmsB_1
Anaerobic dimethyl sulfoxide reductase chain B.
 
  
 0.621
nasF
uroporphyrinogen-III C-methyltransferase.
  
  
 0.590
csdB
4-hydroxyphenylacetate decarboxylase large subunit.
 
  
 0.547
padH
NADH-dependent phenylglyoxylate dehydrogenase subunit epsilon.
 
  
 0.540
AQR98121.1
Phage capsid family protein.
   
    0.533
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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