Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
spoIIMStage II sporulation protein M. (210 aa)    
Predicted Functional Partners:
spoIIIAB
Stage III sporulation protein SpoAB.
  
  
 0.916
spoIIE
Stage II sporulation protein E.
  
   
 0.877
spoIIIAE
Stage III sporulation protein AE precursor.
  
  
 0.860
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.858
spoIIIAD
Stage III sporulation protein AC/AD protein family protein.
  
  
 0.850
yqfC
YabP family protein.
  
   
 0.823
spoIIP
Stage II sporulation protein SpoIIP.
  
   
 0.821
spoIIIAF
Hypothetical protein.
  
   
 0.812
xerD_3
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.806
spoIVB
SpoIVB peptidase precursor.
 
   
 0.804
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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