STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_3Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (292 aa)    
Predicted Functional Partners:
spoIIM
Stage II sporulation protein M.
  
    0.820
xerD_6
Tyrosine recombinase XerD.
  
     0.770
xerC_1
Tyrosine recombinase XerC.
  
     0.758
dnaE
DNA polymerase III subunit alpha.
  
  
 0.641
spoIIIE
DNA translocase SpoIIIE.
 
   
 0.621
baeS_1
Signal transduction histidine-protein kinase BaeS.
   
  
 0.597
parB
Putative chromosome-partitioning protein ParB; Belongs to the ParB family.
  
  
 0.533
soj
Sporulation initiation inhibitor protein Soj.
 
   
 0.522
noc
Nucleoid occlusion protein; Belongs to the ParB family.
  
  
 0.515
topB_2
DNA topoisomerase 3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.502
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.