Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
anfO1Iron only nitrogenase protein AnfO. (211 aa)    
Predicted Functional Partners:
nifB_3
FeMo cofactor biosynthesis protein NifB.
 
   
 0.792
AQR95499.1
Hypothetical protein.
 
     0.769
nifD_3
Nitrogenase molybdenum-iron protein alpha chain.
 
   
 0.767
nifD_4
Nitrogenase molybdenum-iron protein alpha chain; Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.734
nifK_3
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.709
glnB_2
Nitrogen regulatory protein P-II.
 
   
 0.596
nifD_1
Nitrogenase molybdenum-iron protein alpha chain.
 
   
 0.593
nifD_2
Nitrogenase molybdenum-iron protein alpha chain.
 
   
 0.589
AQR95485.1
Hypothetical protein.
       0.579
nifK_2
Nitrogenase molybdenum-iron protein beta chain.
 
   
 0.539
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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