STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiE_3Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE. (205 aa)    
Predicted Functional Partners:
AQR95491.1
Putative ABC transporter ATP-binding protein.
 
   
 0.912
btuF
Vitamin B12-binding protein.
 
 
   0.912
AQR95490.1
Putative ABC transporter permease protein.
 
   
 0.848
glnQ_4
Glutamine transport ATP-binding protein GlnQ.
 
   
 0.826
AQR95494.1
Hypothetical protein.
 
  
  0.811
AQR95496.1
Hypothetical protein.
 
  
  0.807
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
    
 0.681
ispA
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.584
hepT
Heptaprenyl diphosphate synthase component 2; Belongs to the FPP/GGPP synthase family.
  
 0.584
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
    
 0.561
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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