STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR95516.1Helix-turn-helix domain protein. (145 aa)    
Predicted Functional Partners:
hin_2
DNA-invertase hin.
     
 0.603
AQR97321.1
Hypothetical protein.
  
     0.523
AQR93830.1
Hypothetical protein.
  
     0.486
AQR95517.1
Helix-turn-helix domain protein.
       0.465
pheA
P-protein.
    
 0.448
mprA_3
Transcriptional repressor MprA.
  
 
 0.448
rghR
HTH-type transcriptional repressor RghR.
       0.423
AQR96173.1
Hypothetical protein.
  
 
 0.416
AQR94864.1
Metallo-beta-lactamase L1 precursor.
  
 
  0.408
AQR97879.1
Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase.
  
 
 0.400
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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